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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
101
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
125
Transcription
101
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
62
histone
62
histone modification
34
transcription factor
32
narrow histone mark
29
broad histone mark
5
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
49
August, 2017
33
August, 2021
31
February, 2018
26
February, 2021
22
December, 2017
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
244
bam
234
bigWig
125
tsv
113
bed narrowPeak
102
fastq
25
bed bed3+
15
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
277
Homo sapiens
Biosample type
1743
tissue
478
cell line
401
primary cell
277
in vitro differentiated cells
3
stem cell
Organ
73
connective tissue
21
embryo
epithelium
14
liver
2
pancreas
1
heart
Project
277
AMP
Genome assembly (visualization)
277
hg19
245
GRCh38
4
hg18
Lab
265
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
277 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
4
48
8
1
1
cardiomyocytes
59
3
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
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