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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
134
total RNA-seq
42
ATAC-seq
5
pCHi-C
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
267
bam
235
bigWig
129
tsv
118
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
366
Homo sapiens
Biosample type
2762
tissue
682
primary cell
583
cell line
366
in vitro differentiated cells
stem cell
Organ
97
connective tissue
28
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
366
AMP
Genome assembly (visualization)
277
hg19
245
GRCh38
Lab
312
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
biosample_type!
stem cell
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
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