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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1163
total RNA-seq
1083
ChIP-seq
290
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
86
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1361
Transcription
1083
DNA binding
501
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
725
histone modification
724
histone
371
narrow histone mark
352
broad histone mark
220
control
140
transcription factor
37
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
167
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
97
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
72
December, 2017
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
December, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2174
bam
2011
bigWig
1202
tsv
1086
bed narrowPeak
564
bigBed narrowPeak
499
fastq
275
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3123
Homo sapiens
Biosample type
2762
tissue
682
primary cell
583
cell line
370
in vitro differentiated cells
stem cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3035
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2104
GRCh38
2020
hg19
4
hg18
Lab
2726
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
201
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
biosample_type!
stem cell
BIOSAMPLE
ASSAY
3132 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 174 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
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