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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
157
DNA binding
136
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
89
histone
89
histone modification
45
broad histone mark
43
narrow histone mark
40
transcription factor
28
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
61
August, 2017
40
August, 2021
39
February, 2018
26
February, 2021
12
December, 2017
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
267
bam
239
bigWig
129
tsv
122
fastq
114
bed narrowPeak
37
tagAlign
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
2517
tissue
666
primary cell
580
cell line
345
in vitro differentiated cells
7
stem cell
Organ
84
connective tissue
26
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
345
AMP
Genome assembly (visualization)
252
hg19
226
GRCh38
4
hg18
Lab
293
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
8
inconsistent control read length
organ_slims!
epithelium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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