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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
134
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
152
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
87
histone
87
histone modification
45
broad histone mark
41
narrow histone mark
37
transcription factor
28
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
243
bam
221
bigWig
129
tsv
98
fastq
96
bed narrowPeak
37
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
346
Homo sapiens
Biosample type
2674
tissue
682
primary cell
583
cell line
346
in vitro differentiated cells
7
stem cell
Organ
97
connective tissue
16
embryo
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
346
AMP
Genome assembly (visualization)
255
hg19
223
GRCh38
4
hg18
Lab
292
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
organ_slims!
epithelium
month_released!
December, 2017
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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