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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
134
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
136
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
262
bam
239
bigWig
129
tsv
122
fastq
109
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
365
Homo sapiens
Biosample type
2682
tissue
682
primary cell
583
cell line
365
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
365
AMP
Genome assembly (visualization)
272
hg19
240
GRCh38
4
hg18
Lab
311
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
month_released!
November, 2019
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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