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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
128
ATAC-seq
115
total RNA-seq
32
single cell RNA-seq
17
pCHi-C
13
DNase-seq
8
snATAC-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
187
DNA binding
149
DNA accessibility
149
Transcription
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
35
June, 2019
30
August, 2017
18
July, 2019
15
July, 2018
12
February, 2023
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
3
February, 2021
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
154
tsv
96
tagAlign
71
fastq
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
510
Homo sapiens
Biosample type
2722
tissue
583
cell line
510
primary cell
370
in vitro differentiated cells
10
stem cell
Organ
epithelium
194
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
305
AMP
204
T1D
HPAP
1
ITG
Genome assembly (visualization)
401
hg19
311
GRCh38
Lab
270
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
award.project!
HPAP
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
DNase-seq
snATAC-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
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