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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
Assay category
91
DNA binding
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
66
May, 2021
10
August, 2017
8
June, 2019
7
September, 2018
Available data
89
bigWig
85
bed narrowPeak
69
bam
50
tagAlign
17
fastq
14
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
91
Homo sapiens
Biosample type
303
tissue
91
primary cell
49
in vitro differentiated cells
13
cell line
1
stem cell
Organ
epithelium
27
pancreas
9
blood vessel
9
vasculature
9
vein
5
kidney
4
connective tissue
4
musculature of body
1
liver
Project
47
AMP
44
T1D
Genome assembly (visualization)
89
hg19
69
GRCh38
Lab
64
Kyle Gaulton, UCSD
27
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
skeletal muscle myoblast
6
mesenchymal stem cell
4
skeletal muscle satellite cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
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