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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
DNase-seq
Assay category
15
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
14
August, 2017
10
June, 2019
2
November, 2017
1
November, 2020
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
27
Homo sapiens
Biosample type
176
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
27
AMP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
hepatic stellate cell
1
osteoblast
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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