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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
20
ChIP-seq
14
total RNA-seq
11
snATAC-seq
5
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
31
DNA accessibility
20
DNA binding
14
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
20
August, 2017
18
February, 2023
8
January, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
412
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
77
Homo sapiens
Biosample type
76
tissue
1
cell line
Organ
257
pancreas
210
kidney
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
28
T1D
Genome assembly (visualization)
17
hg19
4
GRCh38
Lab
39
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
files.file_type!
bam
organ_slims!!
epithelium
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
tissue
islet of Langerhans
20
20
12
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
Panc1
1
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