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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
20
ATAC-seq
19
ChIP-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
21
DNA accessibility
19
DNA binding
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
28
August, 2021
8
August, 2017
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
May, 2020
1
November, 2017
Available data
bam
531
bigWig
418
fastq
357
bed narrowPeak
320
bigBed narrowPeak
169
tsv
48
bed broadPeak
48
bigBed broadPeak
27
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
85
Homo sapiens
Biosample type
53
tissue
32
cell line
Organ
243
pancreas
210
kidney
epithelium
146
heart
93
bone element
87
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
20
lung
20
musculature of body
18
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
35
hg19
Lab
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
17
AMP-T2D consortium
organ_slims!
epithelium
files.file_type!
bam
target.investigated_as!
histone
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
3
3
1
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
16
2
2
2
1
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