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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
152
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
4
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
Hi-C
Assay category
271
Transcription
187
DNA binding
186
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
41
February, 2021
40
September, 2020
30
August, 2017
25
June, 2019
16
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
5
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
666
Homo sapiens
Biosample type
2557
tissue
666
primary cell
580
cell line
345
in vitro differentiated cells
7
stem cell
Organ
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
289
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
386
hg19
300
GRCh38
Lab
256
AMP-T2D consortium
237
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
666 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
Hi-C
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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