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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
46
ATAC-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
Transcription
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
24
October, 2019
14
February, 2021
4
July, 2019
2
March, 2020
Available data
113
bed narrowPeak
98
bam
71
bigWig
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
129
Homo sapiens
Biosample type
115
tissue
14
cell line
Organ
535
liver
460
pancreas
epithelium
224
brain
197
heart
194
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
129
AMP-T2D consortium
organ_slims!
epithelium
files.file_type!
bigBed broadPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
aorta
13
2
1
1
thoracic aorta
16
1
ascending aorta
16
cell line
smooth muscle cell of the coronary artery
6
8
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