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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
257
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
174
histone modification
173
histone
97
broad histone mark
75
narrow histone mark
45
transcription factor
38
control
6
RNA binding protein
2
chromatin remodeller
Date released
651
February, 2021
373
May, 2021
367
August, 2017
341
May, 2020
340
November, 2017
313
August, 2021
274
October, 2019
153
February, 2023
135
July, 2018
119
May, 2022
115
May, 2019
95
July, 2019
80
April, 2019
79
November, 2018
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
2
June, 2018
1
August, 2018
1
December, 2019
1
October, 2022
Available data
258
fastq
255
bigWig
253
bam
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
360
Homo sapiens
Biosample type
284
tissue
67
in vitro differentiated cells
16
primary cell
Organ
188
pancreas
124
connective tissue
57
adipose tissue
54
liver
epithelium
26
musculature of body
Project
367
AMP
Genome assembly (visualization)
244
hg19
219
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
files.file_type!
bigBed broadPeak
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
1
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