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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
23
transcription factor
15
histone
15
histone modification
12
chromatin remodeller
9
broad histone mark
6
narrow histone mark
4
RNA binding protein
1
recombinant protein
Date released
12
August, 2017
10
December, 2017
8
November, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
38
Homo sapiens
Biosample type
16
in vitro differentiated cells
13
cell line
6
tissue
2
stem cell
1
primary cell
Organ
14
liver
9
pancreas
6
connective tissue
epithelium
3
embryo
Project
38
AMP
Genome assembly (visualization)
38
hg19
36
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
38
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
epithelium
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
cell line
HepG2
13
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
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