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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
683
February, 2021
373
May, 2021
367
August, 2017
341
May, 2020
340
November, 2017
313
August, 2021
274
October, 2019
153
February, 2023
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
80
April, 2019
79
November, 2018
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
78
bigWig
77
bam
60
tsv
17
bed bedMethyl
17
bigBed bedMethyl
7
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
95
Homo sapiens
Biosample type
77
tissue
18
primary cell
Organ
25
heart
18
brain
18
connective tissue
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
95
AMP
Genome assembly (visualization)
78
hg19
74
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
files.file_type!
bigBed broadPeak
month_released!
July, 2018
BIOSAMPLE
ASSAY
95 results
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Clear Filters
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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