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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
86
DNA binding
29
DNA accessibility
7
Transcription
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
101
May, 2021
23
February, 2023
16
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
tsv
86
bed narrowPeak
84
tagAlign
Organism
144
Homo sapiens
Biosample type
108
primary cell
31
tissue
5
cell line
Organ
32
pancreas
8
blood
8
bodily fluid
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2536
AMP
172
HPAP
144
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
86
GRCh38
86
hg19
Lab
140
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
files.file_type!
tsv
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
2
6
11
7
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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