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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
132
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
176
DNA binding
134
Transcription
43
DNA accessibility
2
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
265
bam
237
bigWig
125
tsv
122
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
bigBed narrowPeak
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
362
Homo sapiens
Biosample type
2658
tissue
682
primary cell
577
cell line
362
in vitro differentiated cells
6
stem cell
Organ
97
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
362
AMP
Genome assembly (visualization)
271
hg19
243
GRCh38
4
hg18
Lab
308
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
files.file_type!
xls
month_released!
March, 2020
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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