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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
ChIP-seq
Assay category
12
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
10
February, 2023
3
November, 2017
2
February, 2021
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
liver
4
skeleton
1
blood vessel
1
brain
epithelium
1
vasculature
1
vein
Project
15
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent replicate
organ_slims!
epithelium
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
ChIP-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
3
primary cell
osteoblast
1
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