Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
8
single cell RNA-seq
3
ChIP-seq
Assay category
12
DNA accessibility
8
Transcription
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
10
February, 2023
8
February, 2021
3
November, 2017
1
November, 2018
1
September, 2018
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
11
tissue
5
in vitro differentiated cells
4
cell line
3
primary cell
Organ
6
connective tissue
5
kidney
5
liver
4
bone element
4
skeleton
1
blood vessel
1
brain
epithelium
1
vasculature
1
vein
Project
23
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
5
audit script error
1
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
23 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
tissue
kidney
5
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
3
primary cell
pancreatic cell
2
osteoblast
1
See all biosamples
Download