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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
Assay category
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
13
August, 2017
Available data
2728
bam
2530
bigWig
1431
tsv
1188
bed narrowPeak
1031
fastq
765
bigBed narrowPeak
391
tagAlign
157
txt
108
bed broadPeak
73
bigBed broadPeak
59
bed bed3+
52
zippedFastqFolder
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
8
csv
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
58
cell line
15
primary cell
Organ
58
liver
6
brain
epithelium
6
vasculature
4
blood vessel
2
vein
Project
73
AMP
Genome assembly (visualization)
73
hg19
58
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
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