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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
295
ChIP-seq
Assay category
295
DNA binding
Target of assay
222
histone
222
histone modification
126
narrow histone mark
96
broad histone mark
65
control
8
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
3
May, 2021
Available data
2708
bam
2446
bigWig
1437
bed narrowPeak
1290
tsv
930
fastq
918
bigBed narrowPeak
295
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
288
Homo sapiens
Biosample type
238
tissue
primary cell
37
in vitro differentiated cells
20
cell line
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
epithelium
1
pituitary gland
Project
295
AMP
Genome assembly (visualization)
146
GRCh38
137
hg19
Lab
295
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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