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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1708
ChIP-seq
1257
total RNA-seq
331
ATAC-seq
274
single cell RNA-seq
190
DNase-seq
78
snATAC-seq
48
pCHi-C
28
WGBS
21
Hi-C
18
small RNA-seq
14
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
190
DNA accessibility
Date released
170
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
189
bam
189
bed narrowPeak
189
bigBed narrowPeak
189
bigWig
187
bed broadPeak
187
bigBed broadPeak
185
bed bed3+
12
fastq
Organism
190
Homo sapiens
Biosample type
177
tissue
11
primary cell
1
cell line
1
in vitro differentiated cells
Organ
80
kidney
35
limb
32
brain
32
musculature of body
29
heart
epithelium
18
ureter
10
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
190
AMP
Genome assembly (visualization)
187
GRCh38
172
hg19
Lab
190
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
epithelium
lab.title!
Katalin Susztak, Upenn
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
190 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 40 more…
primary cell
cardiac fibroblast
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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