Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
12
ATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
39
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
400
November, 2017
293
August, 2017
266
October, 2019
206
May, 2021
198
June, 2019
156
February, 2021
152
May, 2020
139
February, 2023
120
May, 2022
115
May, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
62
August, 2021
47
September, 2023
40
May, 2024
40
September, 2020
35
December, 2018
35
July, 2019
26
November, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
16
March, 2020
12
September, 2018
8
January, 2018
6
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
July, 2018
1
August, 2018
1
August, 2022
1
December, 2019
1
May, 2023
1
October, 2022
Available data
tsv
45
bam
44
bigWig
39
bed narrowPeak
20
tagAlign
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
61
Homo sapiens
Biosample type
35
in vitro differentiated cells
25
cell line
2
tissue
Organ
26
liver
epithelium
5
connective tissue
3
pancreas
2
kidney
1
adipose tissue
Project
62
AMP
Genome assembly (visualization)
41
hg19
23
GRCh38
Lab
Katalin Susztak, Upenn
32
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
lab.title!
Katalin Susztak, Upenn
files.file_type!
tsv
BIOSAMPLE
ASSAY
62 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
subcutaneous adipose tissue
1
Download