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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
18
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
161
DNA binding
18
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
15
transcription factor
8
control
5
RNA binding protein
Date released
400
November, 2017
293
August, 2017
266
October, 2019
206
May, 2021
198
June, 2019
156
February, 2021
152
May, 2020
139
February, 2023
120
May, 2022
115
May, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
62
August, 2021
47
September, 2023
40
May, 2024
40
September, 2020
35
December, 2018
35
July, 2019
26
November, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
16
March, 2020
12
September, 2018
8
January, 2018
6
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
July, 2018
1
August, 2018
1
August, 2022
1
December, 2019
1
May, 2023
1
October, 2022
Available data
294
bigWig
267
bam
tsv
130
bed narrowPeak
87
tagAlign
2
bed bed3+
Organism
206
Homo sapiens
Biosample type
154
primary cell
50
in vitro differentiated cells
2
tissue
Organ
21
pancreas
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
105
AMP
101
T1D
Genome assembly (visualization)
140
hg19
100
GRCh38
Lab
184
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
epithelium
lab.title!
Katalin Susztak, Upenn
files.file_type!
tsv
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
cardiomyocytes
3
tissue
pancreas
1
thymus
1
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