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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
17
histone
17
histone modification
12
transcription factor
10
broad histone mark
7
narrow histone mark
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
August, 2017
11
September, 2018
10
November, 2017
4
October, 2017
3
November, 2018
1
December, 2017
Available data
29
fastq
28
bam
26
bed narrowPeak
26
bigWig
15
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
29
Homo sapiens
Biosample type
13
cell line
11
primary cell
4
tissue
1
in vitro differentiated cells
Organ
32
pancreas
epithelium
13
liver
4
brain
1
embryo
Project
29
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
29
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
organ_slims!
epithelium
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2017
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
cell line
HepG2
13
primary cell
pancreatic endocrine cell
11
tissue
brain
4
in vitro differentiated cells
pancreatic endoderm
1
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