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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
8
August, 2021
2
March, 2019
Available data
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
10
Homo sapiens
Biosample type
7
cell line
3
tissue
Organ
4
liver
3
pancreas
2
kidney
Project
10
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
847
AMP-T2D consortium
133
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
74
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
assay_title!
total RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
10 results
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STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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