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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
57
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
47
September, 2023
36
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
85
Homo sapiens
Biosample type
51
tissue
34
cell line
Organ
49
kidney
31
liver
4
pancreas
Project
47
KPMP
38
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3546
AMP-T2D consortium
343
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
85 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
tissue
kidney
47
islet of Langerhans
1
2
1
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
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