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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
single cell RNA-seq
67
ATAC-seq
56
snATAC-seq
44
total RNA-seq
37
ChIP-seq
16
pCHi-C
4
RRBS
3
Hi-C
1
DNAme array
Assay category
131
Transcription
123
DNA accessibility
37
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
57
May, 2020
57
May, 2021
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
8
January, 2021
5
July, 2019
1
August, 2017
1
March, 2023
1
November, 2018
1
September, 2018
Available data
382
bigWig
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
315
Homo sapiens
Biosample type
855
tissue
315
primary cell
103
in vitro differentiated cells
51
cell line
7
stem cell
Organ
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
172
HPAP
118
AMP
24
T1D
1
ITG
Genome assembly (visualization)
41
hg19
1
GRCh38
Lab
172
Klaus Kaestner, Upenn
83
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
8
inconsistent ontology term
organ_slims!
epithelium
month_released!
December, 2018
files.file_type!
bam
BIOSAMPLE
ASSAY
315 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
CD4-positive, alpha-beta memory T cell
22
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