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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
119
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
152
DNA binding
121
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
46
transcription factor
41
broad histone mark
39
narrow histone mark
25
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
228
bam
208
bigWig
114
tsv
98
bed narrowPeak
83
fastq
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
331
Homo sapiens
Biosample type
2722
tissue
682
primary cell
583
cell line
331
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
331
AMP
Genome assembly (visualization)
246
hg19
214
GRCh38
4
hg18
Lab
277
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
organ_slims!
epithelium
month_released!
February, 2018
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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