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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1209
ChIP-seq
1183
total RNA-seq
400
ATAC-seq
289
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
54
pCHi-C
17
Hi-C
12
WGBS
5
GRO-seq
5
RRBS
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
188
DNA accessibility
Date released
172
June, 2019
6
November, 2018
5
October, 2019
4
August, 2017
1
November, 2020
Available data
188
bam
188
bed narrowPeak
188
bigBed narrowPeak
188
bigWig
186
bed broadPeak
186
bigBed broadPeak
184
bed bed3+
9
fastq
Organism
188
Homo sapiens
Biosample type
174
tissue
12
primary cell
1
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
188
AMP
Genome assembly (visualization)
186
GRCh38
171
hg19
Lab
188
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
liver
month_released!
July, 2019
BIOSAMPLE
ASSAY
188 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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