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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
128
ATAC-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
1
DNAme array
1
Hi-C
1
RRBS
Assay category
Transcription
197
DNA accessibility
187
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
100
May, 2020
35
June, 2019
30
August, 2017
29
February, 2021
21
May, 2022
12
February, 2023
11
September, 2018
8
January, 2021
July, 2019
3
November, 2017
2
November, 2020
1
March, 2023
1
October, 2019
Available data
236
bigWig
225
bam
189
bed narrowPeak
96
tagAlign
70
fastq
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
21
zippedFastqFolder
12
bed bed3+
12
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
404
Homo sapiens
Biosample type
1507
tissue
502
cell line
404
primary cell
234
in vitro differentiated cells
8
stem cell
Organ
epithelium
191
pancreas
32
vasculature
27
blood vessel
27
kidney
22
connective tissue
22
vein
14
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
7
liver
4
eye
1
bone element
1
bone marrow
Project
247
AMP
108
T1D
48
HPAP
1
ITG
Genome assembly (visualization)
252
hg19
169
GRCh38
Lab
214
AMP-T2D consortium
141
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
1
ITG
Audit category:
33
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
month_released!
July, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
404 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
RRBS
primary cell
monocyte
85
15
1
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
pancreatic endocrine cell
23
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