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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
146
total RNA-seq
ATAC-seq
114
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
1
DNAme array
1
Hi-C
1
RRBS
Assay category
260
Transcription
187
DNA binding
69
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
54
May, 2022
47
May, 2020
41
February, 2021
40
September, 2020
39
February, 2023
35
June, 2019
30
August, 2017
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
5
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
Available data
321
bigWig
293
bam
173
bed narrowPeak
171
fastq
129
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
14
bed bed3+
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
536
Homo sapiens
Biosample type
2443
tissue
573
cell line
536
primary cell
328
in vitro differentiated cells
10
stem cell
Organ
epithelium
275
pancreas
32
vasculature
29
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
11
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
204
T1D
172
HPAP
159
AMP
1
ITG
Genome assembly (visualization)
322
hg19
282
GRCh38
Lab
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
124
AMP-T2D consortium
1
ITG
Audit category:
32
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
month_released!
July, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
536 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
RRBS
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
pancreatic endocrine cell
23
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