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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
116
ATAC-seq
114
single cell RNA-seq
107
total RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
1
DNAme array
1
Hi-C
1
RRBS
Assay category
221
Transcription
187
DNA binding
185
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
February, 2023
42
February, 2021
40
September, 2020
35
June, 2019
30
August, 2017
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
367
bigWig
354
bam
189
bed narrowPeak
132
fastq
129
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
14
bed bed3+
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
613
Homo sapiens
Biosample type
2604
tissue
613
primary cell
578
cell line
354
in vitro differentiated cells
10
stem cell
Organ
epithelium
309
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
275
AMP
204
T1D
133
HPAP
1
ITG
Genome assembly (visualization)
383
hg19
298
GRCh38
Lab
240
AMP-T2D consortium
239
Kyle Gaulton, UCSD
133
Klaus Kaestner, Upenn
1
ITG
Audit category:
37
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
month_released!
July, 2019
February, 2023
BIOSAMPLE
ASSAY
613 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
RRBS
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
pancreatic endocrine cell
23
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