Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1363
total RNA-seq
358
ATAC-seq
290
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
20
Hi-C
16
WGBS
6
RRBS
5
GRO-seq
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
3D chromatin structure
Date released
9
March, 2020
July, 2019
4
October, 2019
3
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
17
hic
15
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
20
Homo sapiens
Biosample type
12
tissue
4
in vitro differentiated cells
3
cell line
1
primary cell
Organ
9
pancreas
epithelium
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
kidney
Project
19
AMP
1
ITG
Genome assembly (visualization)
17
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
month_released!
July, 2019
files.file_type!
xls
BIOSAMPLE
ASSAY
20 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
Panc1
1
primary cell
chondrocytes
1
See all biosamples
Download