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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
13
total RNA-seq
4
pCHi-C
3
ATAC-seq
Assay category
212
DNA binding
33
DNA accessibility
13
Transcription
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
1
May, 2021
Available data
222
bam
198
bigWig
196
bed narrowPeak
120
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bigBed broadPeak
30
bed bed3+
16
tsv
15
fastq
1
bed bed3
1
tagAlign bed3+
Organism
262
Homo sapiens
Biosample type
256
tissue
6
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
261
AMP
1
T1D
Genome assembly (visualization)
199
GRCh38
139
hg19
Lab
261
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
epithelium
month_released!
July, 2019
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
ATAC-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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