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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
56
total RNA-seq
44
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
62
Transcription
50
DNA accessibility
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
Available data
147
bam
121
bigWig
111
bed narrowPeak
63
bigBed narrowPeak
63
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bedpe bed3+
1
hic
Organism
193
Homo sapiens
Biosample type
126
tissue
66
cell line
1
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
164
GRCh38
130
hg19
Lab
193
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
month_released!
July, 2019
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
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