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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
1
pCHi-C
Assay category
6
3D chromatin structure
Date released
March, 2020
3
October, 2019
2
August, 2021
1
August, 2018
1
November, 2019
Available data
3062
bam
2813
bigWig
1624
bed narrowPeak
1402
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
bed bed3
8
csv
8
hic
7
bed bedgraph
7
bedpe bed3+
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
tissue
1
cell line
Organ
6
pancreas
epithelium
1
adipose tissue
1
connective tissue
1
heart
1
liver
Project
7
AMP
Genome assembly (visualization)
5
hg19
Lab
5
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
epithelium
month_released!
March, 2020
BIOSAMPLE
ASSAY
7 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
tissue
islet of Langerhans
2
heart
1
cell line
HepG2
1
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