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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
184
total RNA-seq
22
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
DNase-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
484
DNA binding
188
Transcription
24
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
287
transcription factor
106
control
88
histone modification
87
histone
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
34
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
November, 2018
48
December, 2017
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
Available data
602
bam
546
bigWig
397
fastq
371
bed narrowPeak
292
bigBed narrowPeak
169
tsv
82
tagAlign
59
bed broadPeak
59
bigBed broadPeak
5
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
710
Homo sapiens
Biosample type
355
cell line
354
tissue
1
primary cell
Organ
933
pancreas
738
liver
683
connective tissue
epithelium
490
adipose tissue
393
heart
292
kidney
284
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
710
AMP
Genome assembly (visualization)
550
hg19
455
GRCh38
Lab
639
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
month_released!
November, 2018
files.file_type!
txt
BIOSAMPLE
ASSAY
710 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
DNase-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
1
2
2
2
1
tissue
liver
141
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
primary cell
hepatic stellate cell
1
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