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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
57
total RNA-seq
11
ATAC-seq
6
DNase-seq
2
WGBS
Assay category
79
DNA binding
57
Transcription
17
DNA accessibility
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
26
October, 2019
8
July, 2019
4
June, 2019
1
March, 2020
Available data
155
bam
128
bigWig
113
bed narrowPeak
67
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
155
Homo sapiens
Biosample type
87
tissue
66
cell line
2
primary cell
Organ
682
pancreas
628
liver
592
connective tissue
441
adipose tissue
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
45
blood
45
bodily fluid
42
nerve
36
embryo
20
vein
18
ureter
15
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
155
AMP
Genome assembly (visualization)
136
GRCh38
135
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
month_released!
November, 2018
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
tibial artery
23
1
2
thoracic aorta
16
2
1
ascending aorta
16
1
1
aorta
13
1
2
coronary artery
5
1
2
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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