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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
56
ChIP-seq
45
ATAC-seq
6
single cell RNA-seq
4
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
66
Transcription
56
DNA binding
49
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
22
broad histone mark
14
narrow histone mark
13
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
October, 2019
8
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
Available data
129
bam
107
bigWig
92
bed narrowPeak
67
tsv
43
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
175
Homo sapiens
Biosample type
107
tissue
66
cell line
2
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
175
AMP
Genome assembly (visualization)
150
GRCh38
115
hg19
Lab
175
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
month_released!
October, 2019
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
5
36
2
aorta
1
13
4
2
1
1
ascending aorta
2
16
1
thoracic aorta
2
16
1
pulmonary artery
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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