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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
59
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
72
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
268
August, 2021
153
February, 2023
137
February, 2021
129
August, 2017
106
May, 2021
96
May, 2022
61
October, 2019
58
May, 2020
47
September, 2023
45
March, 2020
40
September, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
8
October, 2017
5
March, 2023
4
December, 2019
4
July, 2018
4
March, 2019
4
November, 2020
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
October, 2022
1
September, 2018
Available data
123
tsv
103
bed narrowPeak
64
xls
57
txt
bam
44
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
267
Homo sapiens
Biosample type
229
tissue
34
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
epithelium
1
adipose tissue
Project
268
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
128
Katalin Susztak, Upenn
100
AMP-T2D consortium
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
files.file_type!
bam
BIOSAMPLE
ASSAY
268 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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