Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
30
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
30
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
364
November, 2017
314
May, 2020
311
May, 2021
304
August, 2021
302
August, 2017
189
June, 2019
153
February, 2023
147
October, 2019
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
82
May, 2019
66
December, 2017
63
October, 2018
57
April, 2019
56
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
10
November, 2020
8
January, 2018
8
September, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
94
bed narrowPeak
64
xls
57
txt
38
bam
35
bigWig
13
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
303
Homo sapiens
Biosample type
229
tissue
40
cell line
35
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
304
AMP
Genome assembly (visualization)
95
GRCh38
48
hg19
Lab
138
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
304 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
See all biosamples
Download