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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
30
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
30
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
364
November, 2017
314
May, 2020
309
May, 2021
299
August, 2021
228
February, 2021
205
August, 2017
175
June, 2019
144
October, 2019
139
February, 2023
133
July, 2018
120
May, 2022
87
November, 2018
82
May, 2019
77
July, 2019
66
December, 2017
57
April, 2019
54
March, 2020
47
September, 2023
44
November, 2019
40
October, 2018
40
September, 2020
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
14
April, 2018
14
May, 2023
8
September, 2018
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
4
November, 2020
2
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
92
bed narrowPeak
64
xls
57
txt
38
bam
33
bigWig
13
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
299
Homo sapiens
Biosample type
228
tissue
40
cell line
31
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
connective tissue
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
299
AMP
Genome assembly (visualization)
95
GRCh38
44
hg19
Lab
137
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
299 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
16
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
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