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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
38
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
75
DNA binding
60
DNA accessibility
60
Transcription
Target of assay
40
transcription factor
18
control
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
99
bam
99
fastq
94
bed narrowPeak
76
bigWig
54
zippedFastqFolder
36
bigBed narrowPeak
16
bed bed3+
7
txt
Organism
195
Homo sapiens
Biosample type
114
tissue
54
primary cell
24
in vitro differentiated cells
3
stem cell
Organ
104
pancreas
103
liver
epithelium
13
embryo
2
musculature of body
Project
141
AMP
54
HPAP
Genome assembly (visualization)
100
hg19
61
GRCh38
Lab
77
AMP-T2D consortium
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
epithelium
month_released!
December, 2019
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
38
20
20
islet of Langerhans
18
6
right lobe of liver
10
skeletal muscle tissue
1
1
primary cell
Langerhans cell
33
21
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
stem cell
hESC
3
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