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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
70
ChIP-seq
16
single cell RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
136
Transcription
70
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
644
February, 2021
400
November, 2017
382
August, 2017
313
August, 2021
296
May, 2020
279
October, 2019
221
May, 2021
198
June, 2019
135
July, 2018
115
May, 2019
95
July, 2019
91
February, 2023
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
66
May, 2022
54
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
April, 2018
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
218
bam
211
bigWig
131
tsv
105
fastq
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
223
Homo sapiens
Biosample type
146
tissue
61
cell line
16
primary cell
Organ
164
pancreas
53
liver
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
223
AMP
Genome assembly (visualization)
210
GRCh38
202
hg19
Lab
223
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
223 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic cell
4
co-expressing pancreatic endocrine cell
2
mast cell
2
pancreatic epsilon cell
2
pancreatic stellate cell
2
+ See 3 more…
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