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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
120
total RNA-seq
15
single cell RNA-seq
Assay category
400
DNA binding
135
Transcription
Target of assay
242
transcription factor
86
histone
86
histone modification
69
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
517
bam
459
bigWig
335
fastq
309
bed narrowPeak
308
bigBed narrowPeak
131
tsv
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
535
Homo sapiens
Biosample type
315
cell line
202
tissue
18
primary cell
Organ
315
liver
157
pancreas
91
brain
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
535
AMP
Genome assembly (visualization)
407
GRCh38
406
hg19
Lab
535
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
month_released!
October, 2018
BIOSAMPLE
ASSAY
535 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
315
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
pancreatic cell
3
co-expressing pancreatic endocrine cell
2
mast cell
2
pancreatic epsilon cell
2
+ See 4 more…
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