Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
18
small RNA-seq
17
ATAC-seq
12
WGBS
9
RRBS
8
single cell RNA-seq
6
Hi-C
2
FAIRE-seq
Assay category
66
Transcription
21
DNA methylation
19
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
80
bigWig
79
bam
62
tsv
17
bed bedMethyl
17
bigBed bedMethyl
7
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
fastq
2
hdf5
Organism
112
Homo sapiens
Biosample type
92
tissue
20
primary cell
Organ
25
heart
25
kidney
19
connective tissue
18
brain
epithelium
13
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
7
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
112
AMP
Genome assembly (visualization)
88
GRCh38
81
hg19
Lab
98
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
RRBS
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
kidney
11
1
3
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 12 more…
See all biosamples
Download