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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
470
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
306
transcription factor
86
histone
86
histone modification
82
recombinant protein
75
control
56
RNA binding protein
50
broad histone mark
36
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
473
bam
408
bigWig
406
fastq
382
bed narrowPeak
381
bigBed narrowPeak
78
tagAlign
75
bed broadPeak
69
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
488
Homo sapiens
Biosample type
376
cell line
108
tissue
4
primary cell
Organ
368
liver
93
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
epithelium
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
488
AMP
Genome assembly (visualization)
355
GRCh38
346
hg19
Lab
488
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
month_released!
September, 2017
BIOSAMPLE
ASSAY
488 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 8 more…
primary cell
astrocyte of the cerebellum
3
pancreatic cell
1
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