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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
39
total RNA-seq
19
WGBS
18
small RNA-seq
9
DNase-seq
9
RRBS
6
ATAC-seq
6
Hi-C
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
61
Transcription
28
DNA methylation
18
DNA accessibility
6
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
164
bam
158
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
60
tsv
24
bed bedMethyl
24
bigBed bedMethyl
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
hdf5
1
csv
Organism
183
Homo sapiens
Biosample type
103
tissue
61
cell line
19
primary cell
Organ
63
liver
25
heart
20
brain
19
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
epithelium
13
pancreas
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
183
AMP
Genome assembly (visualization)
153
GRCh38
149
hg19
Lab
183
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
DNase-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 27 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 11 more…
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